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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ZNF711
wikigenes
PDBj
CellType: SH-SY5Y
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX017326
GSM518560: ZNF711 in SH-SY5Y
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ZNF711
Cell type
Cell type Class
Neural
Cell type
SH-SY5Y
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
neuroblastoma cell line
cell line
neuroblastoma cell line SH-SY5Y
subclone
neuroblast-like subclone of SK-N-SH
antibody
anti-ZNF711
Sequenced DNA Library
library_name
ZNF711 in SH-SY5Y
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15461763
Reads aligned (%)
79.7
Duplicates removed (%)
8.8
Number of peaks
537 (qval < 1E-05)
hg19
Number of total reads
15461763
Reads aligned (%)
78.9
Duplicates removed (%)
9.7
Number of peaks
679 (qval < 1E-05)
Base call quality data from
DBCLS SRA